Research Workflow

3 articles

47 Scripts to 15: Cleaning a Research Codebase

Research projects accumulate code debt. An AI agent can map dependencies, identify dead code, and reorganize months of accumulated scripts, with counterfactual tests to verify nothing broke.

Nov 2025 · Methodology

From Methods Paragraph to Working Pipeline: AI-Assisted Implementation

A well-written methodology section is almost executable code. The gap between describing a procedure and implementing it has narrowed dramatically with agent-based coding tools.

Oct 2025 · Methodology

One Context File, Zero Re-Explanations: Teaching AI Your Research Project

Every new coding session with AI starts the same way: re-explaining the project. A single CLAUDE.md file loads automatically every session. Write the context once; the agent reads it every time.

Oct 2025 · Methodology